Probiotics

What Are Soil-Based Probiotics?

Scientists now have more powerful tools than ever to study the complex world of bacteria — revealing new information on a new sub-category of probiotics.

References

  1. Thursby, E. & Juge, N. 2017. Introduction to the human gut microbiota. Biochem J, 474, 1823-1836.
  2. Ursell, L. K., Metcalf, J. L., Parfrey, L. W. & Knight, R. 2012. Defining the human microbiome. Nutr Rev, 70 Suppl 1, S38-44.
  3. Reid, A., And Greene, S. 2013. Human Microbiome. In: MICROBIOLOGY, T. A. A. O. (ed.)
  4. Le Chatelier, E., Nielsen, T., Qin, J., Prifti, E., Hildebrand, F., Falony, G., Almeida, M., Arumugam, M., Batto, J. M., Kennedy, S., Leonard, P., Li, J., Burgdorf, K., Grarup, N., Jorgensen, T., Brandslund, I., Nielsen, H. B., Juncker, A. S., Bertalan, M., Levenez, F., Pons, N., Rasmussen, S., Sunagawa, S., Tap, J., Tims, S., Zoetendal, E. G., Brunak, S., Clement, K., Dore, J., Kleerebezem, M., Kristiansen, K., Renault, P., Sicheritz-Ponten, T., De Vos, W. M., Zucker, J. D., Raes, J., Hansen, T., Meta, H. I. T. C., Bork, P., Wang, J., Ehrlich, S. D. & Pedersen, O. 2013. Richness of human gut microbiome correlates with metabolic markers. Nature, 500, 541-6.
  5. O’mahony, S. M., Clarke, G., Borre, Y. E., Dinan, T. G. & Cryan, J. F. 2015. Serotonin, tryptophan metabolism and the brain-gut-microbiome axis. Behav Brain Res, 277, 32-48.
  6. Foster, K. R., Schluter, J., Coyte, K. Z. & Rakoff-Nahoum, S. 2017. The evolution of the host microbiome as an ecosystem on a leash. Nature, 548, 43-51.
  7. Ley, R. E., Peterson, D. A. & Gordon, J. I. 2006. Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell, 124, 837-48.
  8. Neu, J. & Rushing, J. 2011. Cesarean versus vaginal delivery: long-term infant outcomes and the hygiene hypothesis. Clin Perinatol, 38, 321-31.
  9. Sella, S. R., Vandenberghe, L. P. & Soccol, C. R. 2014. Life cycle and spore resistance of spore-forming Bacillus atrophaeus. Microbiol Res, 169, 931-9.
  10. Ursell, L. K., Metcalf, J. L., Parfrey, L. W. & Knight, R. 2012. Defining the human microbiome. Nutr Rev, 70 Suppl 1, S38-44.
  11. 2012. NIH Human Microbiome Project defines normal bacterial makeup of the body [Online]. National Institutes of Health: US Dept of Health & Human Services. Available: https://www.nih.gov/news-events/news-releases/nih-human-microbiome-project-defines-normal-bacterial-makeup-body [Accessed].
  12. Human Microbiome Jumpstart Reference Strains, C., Nelson, K. E., Weinstock, G. M., Highlander, S. K., Worley, K. C., Creasy, H. H., Wortman, J. R., Rusch, D. B., Mitreva, M., Sodergren, E., Chinwalla, A. T., Feldgarden, M., Gevers, D., Haas, B. J., Madupu, R., Ward, D. V., Birren, B. W., Gibbs, R. A., Methe, B., Petrosino, J. F., Strausberg, R. L., Sutton, G. G., White, O. R., Wilson, R. K., Durkin, S., Giglio, M. G., Gujja, S., Howarth, C., Kodira, C. D., Kyrpides, N., Mehta, T., Muzny, D. M., Pearson, M., Pepin, K., Pati, A., Qin, X., Yandava, C., Zeng, Q., Zhang, L., Berlin, A. M., Chen, L., Hepburn, T. A., Johnson, J., Mccorrison, J., Miller, J., Minx, P., Nusbaum, C., Russ, C., Sykes, S. M., Tomlinson, C. M., Young, S., Warren, W. C., Badger, J., Crabtree, J., Markowitz, V. M., Orvis, J., Cree, A., Ferriera, S., Fulton, L. L., Fulton, R. S., Gillis, M., Hemphill, L. D., Joshi, V., Kovar, C., Torralba, M., Wetterstrand, K. A., Abouellleil, A., Wollam, A. M., Buhay, C. J., Ding, Y., Dugan, S., Fitzgerald, M. G., Holder, M., Hostetler, J., Clifton, S. W., Allen-Vercoe, E., Earl, A. M., Farmer, C. N., Liolios, K., Surette, M. G., Xu, Q., Pohl, C., Wilczek-Boney, K. & Zhu, D. 2010. A catalog of reference genomes from the human microbiome. Science, 328, 994-9.
  13. Specter, M. 2012. Germs Are Us [Online]. The New Yorker. Available: https://www.newyorker.com/magazine/2012/10/22/germs-are-us [Accessed].
  14. Specter, M. 2012. Germs Are Us [Online]. The New Yorker. Available: https://www.newyorker.com/magazine/2012/10/22/germs-are-us [Accessed].
  15. Ley, R. E., Peterson, D. A. & Gordon, J. I. 2006. Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell, 124, 837-48.
  16. Maier, L. & Typas, A. 2017. Systematically investigating the impact of medication on the gut microbiome. Current Opinion in Microbiology, 39, 128-135.
  17. Maier, L. & Typas, A. 2017. Systematically investigating the impact of medication on the gut microbiome. Current Opinion in Microbiology, 39, 128-135.
  18. Foster, J. A., Rinaman, L. & Cryan, J. F. 2017. Stress & the gut-brain axis: Regulation by the microbiome. Neurobiology of Stress, 7, 124-136.
  19. Trinder, M., Bisanz, J.E., Burton, J.P., Reid, G. 2015. Bacteria Need “Sleep” Too?: Microbiome Circadian Rhythmicity, Metabolic Disease, and Beyond. UTMJ, 92, 52-55.
  20. Conlon, M. A. & Bird, A. R. 2014. The impact of diet and lifestyle on gut microbiota and human health. Nutrients, 7, 17-44.
  21. Conlon, M. A. & Bird, A. R. 2014. The impact of diet and lifestyle on gut microbiota and human health. Nutrients, 7, 17-44.
  22. Riddle, M. S. & Connor, B. A. 2016. The Traveling Microbiome. Curr Infect Dis Rep, 18, 29.
  23. Tasnim, N., Abulizi, N., Pither, J., Hart, M. M. & Gibson, D. L. 2017. Linking the Gut Microbial Ecosystem with the Environment: Does Gut Health Depend on Where We Live? Front Microbiol, 8, 1935.
  24. Neufeld, K. M., Kang, N., Bienenstock, J. & Foster, J. A. 2011. Reduced anxiety-like behavior and central neurochemical change in germ-free mice. Neurogastroenterol Motil, 23, 255-64, e119.
  25. O’mahony, S. M., Clarke, G., Borre, Y. E., Dinan, T. G. & Cryan, J. F. 2015. Serotonin, tryptophan metabolism and the brain-gut-microbiome axis. Behav Brain Res, 277, 32-48.
  26. Dibaise, J. K., Zhang, H., Crowell, M. D., Krajmalnik-Brown, R., Decker, G. A. & Rittmann, B. E. 2008. Gut microbiota and its possible relationship with obesity. Mayo Clin Proc, 83, 460-9.
  27. Le Chatelier, E., Nielsen, T., Qin, J., Prifti, E., Hildebrand, F., Falony, G., Almeida, M., Arumugam, M., Batto, J. M., Kennedy, S., Leonard, P., Li, J., Burgdorf, K., Grarup, N., Jorgensen, T., Brandslund, I., Nielsen, H. B., Juncker, A. S., Bertalan, M., Levenez, F., Pons, N., Rasmussen, S., Sunagawa, S., Tap, J., Tims, S., Zoetendal, E. G., Brunak, S., Clement, K., Dore, J., Kleerebezem, M., Kristiansen, K., Renault, P., Sicheritz-Ponten, T., De Vos, W. M., Zucker, J. D., Raes, J., Hansen, T., Meta, H. I. T. C., Bork, P., Wang, J., Ehrlich, S. D. & Pedersen, O. 2013. Richness of human gut microbiome correlates with metabolic markers. Nature, 500, 541-6.
  28. Dodd, M. S., Papineau, D., Grenne, T., Slack, J. F., Rittner, M., Pirajno, F., O’neil, J. & Little, C. T. S. 2017. Evidence for early life in Earth’s oldest hydrothermal vent precipitates. Nature, 543, 60.
  29. Ramirez-Puebla, S. T., Servin-Garciduenas, L. E., Jimenez-Marin, B., Bolanos, L. M., Rosenblueth, M., Martinez, J., Rogel, M. A., Ormeno-Orrillo, E. & Martinez-Romero, E. 2013.
  30. Ursell, L. K., Metcalf, J. L., Parfrey, L. W. & Knight, R. 2012. Defining the human microbiome. Nutr Rev, 70 Suppl 1, S38-44.
  31. Sella, S. R., Vandenberghe, L. P. & Soccol, C. R. 2014. Life cycle and spore resistance of spore-forming Bacillus atrophaeus. Microbiol Res, 169, 931-9.
  32. Lehman, M. R., Cambardella, A. C., Stott, E. D., Acosta-Martinez, V., Manter, K. D., Buyer, S. J., Maul, E. J., Smith, L. J., Collins, P. H., Halvorson, J. J., Kremer, J. R., Lundgren, G. J., Ducey, F. T., Jin, L. V. & Karlen, L. D. 2015. Understanding and Enhancing Soil Biological Health: The Solution for Reversing Soil Degradation. Sustainability, 7.
  33. Lacanne, C. E. & Lundgren, J. G. 2018. Regenerative agriculture: merging farming and natural resource conservation profitably. PeerJ, 6, e4428
  34. Trinder, M., Bisanz, J.E., Burton, J.P., Reid, G. 2015. Bacteria Need “Sleep” Too?: Microbiome Circadian Rhythmicity, Metabolic Disease, and Beyond. UTMJ, 92, 52-55
  35. Foster, J. A., Rinaman, L. & Cryan, J. F. 2017. Stress & the gut-brain axis: Regulation by the microbiome. Neurobiology of Stress, 7, 124-136.
  36. Mueller, N. T., Bakacs, E., Combellick, J., Grigoryan, Z. & Dominguez-Bello, M. G. 2015. The infant microbiome development: mom matters. Trends Mol Med, 21, 109-17.
  37. Tasnim, N., Abulizi, N., Pither, J., Hart, M. M. & Gibson, D. L. 2017. Linking the Gut Microbial Ecosystem with the Environment: Does Gut Health Depend on Where We Live? Front Microbiol, 8, 1935.
  38. Sudha, M. R., Bhonagiri, S. & Kumar, M. A. 2013. Efficacy of Bacillus clausii strain UBBC-07 in the treatment of patients suffering from acute diarrhoea. Benef Microbes, 4, 211-6.
  39. Majeed, M., Nagabhushanam, K., Natarajan, S., Sivakumar, A., Ali, F., Pande, A., Majeed, S. & Karri, S. K. 2016. Bacillus coagulans MTCC 5856 supplementation in the management of diarrhea predominant Irritable Bowel Syndrome: a double blind randomized placebo controlled pilot clinical study. Nutr J, 15, 21.
  40. Horosheva, T. V., Vodyanoy, V., and Sorokulova, I. 2014. Efficacy of Bacillus probiotics in prevention of antibiotic-associated diarrhoea: a randomized, double-blind, placebo-controlled clinical trial. JMM Case Reports, 6.
  41. Yang, O. O., Kelesidis, T., Cordova, R. & Khanlou, H. 2014. Immunomodulation of antiretroviral drug-suppressed chronic HIV-1 infection in an oral probiotic double-blind placebo-controlled trial. AIDS Res Hum Retroviruses, 30, 988-95.
  42. Jager, R., Shields, K. A., Lowery, R. P., De Souza, E. O., Partl, J. M., Hollmer, C., Purpura, M. & Wilson, J. M. 2016. Probiotic Bacillus coagulans GBI-30, 6086 reduces exercise-induced muscle damage and increases recovery. PeerJ, 4, e2276
  43. Tewari, V. V., Dubey, S. K. & Gupta, G. 2015. Bacillus clausii for Prevention of Late-onset Sepsis in Preterm Infants: A Randomized Controlled Trial. J Trop Pediatr, 61, 377-85.
  44. Mcfarlin, B. K., Henning, A. L., Bowman, E. M., Gary, M. A. & Carbajal, K. M. 2017. Oral spore-based probiotic supplementation was associated with reduced incidence of post-prandial dietary endotoxin, triglycerides, and disease risk biomarkers. World J Gastrointest Pathophysiol, 8, 117-126.
  45. Elshaghabee, F. M. F., Rokana, N., Gulhane, R. D., Sharma, C. & Panwar, H. 2017. Bacillus As Potential Probiotics: Status, Concerns, and Future Perspectives. Front Microbiol, 8, 1490.
  46. Tam, N. K., Uyen, N. Q., Hong, H. A., Duc Le, H., Hoa, T. T., Serra, C. R., Henriques, A. O. & Cutting, S. M. 2006. The intestinal life cycle of Bacillus subtilis and close relatives. J Bacteriol, 188, 2692-700.
  47. Tam, N. K., Uyen, N. Q., Hong, H. A., Duc Le, H., Hoa, T. T., Serra, C. R., Henriques, A. O. & Cutting, S. M. 2006. The intestinal life cycle of Bacillus subtilis and close relatives. J Bacteriol, 188, 2692-700.
  48. Hong, H. A., Khaneja, R., Tam, N. M., Cazzato, A., Tan, S., Urdaci, M., Brisson, A., Gasbarrini, A., Barnes, I. & Cutting, S. M. 2009. Bacillus subtilis isolated from the human gastrointestinal tract. Res Microbiol, 160, 134-43.
  49. Mcnulty, N. P., Yatsunenko, T., Hsiao, A., Faith, J. J., Muegge, B. D., Goodman, A. L., Henrissat, B., Oozeer, R., Cools-Portier, S., Gobert, G., Chervaux, C., Knights, D., Lozupone, C. A., Knight, R., Duncan, A. E., Bain, J. R., Muehlbauer, M. J., Newgard, C. B., Heath, A. C. & Gordon, J. I. 2011. The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins. Sci Transl Med, 3, 106ra106.
  50. Bader, J., Albin, A. & Stahl, U. 2012. Spore-forming bacteria and their utilization as probiotics. Benef Microbes, 3, 67-75.
Share This
Get wellness info & discounts